miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159733294|gb|EY126557.1|EY126557 AATCATCATCATCATCATCTCAATCTCTCTCTCTCTCTCTCTCTCACATACACACCCACAGGTTTATCTTCATTTCTATG
TTCCGAACAACTCTTCAGTCTAGCTCAATTCTTGATTTATTTGCCCCTTCACTTTGTTTTTTTGCTGCTTCTTTTTTTAA
ATCGAGGGATTATCAACGAAAAAAAAAAAGAGCCCAACTAAAAAAATAACTATGTCTTCACCAAGCAAGAGGCGTGAGAT
GGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAATGATGGTATGCAGGAGTTCTATGTGCTTTTCC
ATGGACCCAATGAAAGTCCTTACCATGGTGGAGTATGGAAAATAAGGGTGGAGCTTACTGAAGCTTATCCCTATAAATCT
CCATCCATAGGATTCATTAACAAGATTTATCACCCCAATGTTGACGAAATGTCAGGCTCCGTTTGTTTAGATGTTATTAA
CCAGACATGGAGCCCTATGTTTGACTTGGTGAATGTGTTTGAGGTATTTTTACCGCAACTACTTTTGTACCCGAATCCAT
CGGACCCTTTGAACGGCGAGGCTGCTGCTCTAATGATGCGTGATCGAACTGCTTACGAACAGAGAGTTAAAGAGTATTGT
CAGAAATATGCGAAGCCAGAAGATATAGGGGTAGCCCCGGAAGAGAAATCGAGCGACGAGGAGTTGAGCGAA




Most similar to sp|P16577|UBC4_WHEAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P16577|UBC4_WHEAT Ubiquitin-conjugating enzyme E2-23 kDa
           OS=Triticum aestivum GN=UBC4 PE=1 SV=1
          Length = 184

 Score =  291 bits (746), Expect = 2e-78
 Identities = 136/161 (84%), Positives = 148/161 (91%)
 Frame = +2

Query: 230 RREMDLMKLMMSDYKVEMINDGMQEFYVLFHGPNESPYHGGVWKIRVELTEAYPYKSPSI 409
           RREMDLMKLMMSDYKV+MINDGM EF+V FHGP +S Y GGVWK+RVELTEAYPYKSPSI
Sbjct: 7   RREMDLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSI 66

Query: 410 GFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAA 589
           GF NKIYHPNVDEMSGSVCLDVINQTWSPMFDLVN+FEVFLPQLLLYPNPSDPLNGEAA+
Sbjct: 67  GFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAAS 126

Query: 590 LMMRDRTAYEQRVKEYCQKYAKPEDIGVAPEEKSSDEELSE 712
           LMMRD+ AYE +VKEYC++YAKPEDI    EE+ SDEELS+
Sbjct: 127 LMMRDKNAYENKVKEYCERYAKPEDISPEEEEEESDEELSD 167